Evidence and sources
Each number on the GroEL–GroES page goes back to an experiment or a calculation. Each card shows the result, how it was measured, and where it was published.
Measurements
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Big picture numbers
Structures
- 1XCKApo GroEL tetradecamerWild-type apo GroEL at 2.92 A. It is the start state for every cage-opening morph. X-ray diffraction, 2.92 Å.
- 1OELApo GroEL heptamer, T stateThe apo heptamer used as fit reference for the cryo-EM ATP states, so numbering matches them. X-ray diffraction, 2.8 Å.
- 4AAQGroEL-ATP7, Rs1 stateFirst step after ATP binding. It starts the morph series to the GroES-bound cage. Electron microscopy, 8 Å.
- 4AARGroEL-ATP7, Rs2 stateSecond step of apical-domain motion, same chain numbering as the other ATP states. Electron microscopy, 8 Å.
- 4AASGroEL-ATP7, Rs-open stateThe open state that can hold substrate and still dock GroES. Electron microscopy, 8.5 Å.
- 1AONGroEL-GroES-(ADP)7 bulletThe folding chamber itself. It is the end state of the cage-opening morph. X-ray diffraction, 3 Å.
- 1SVTGroEL-GroES-(ADP-AlFx)7Traps the hydrolysis step inside the capped cis ring. X-ray diffraction, 2.808 Å.
- 1KP8GroEL with ATP analogue in all 14 subunitsHigh-resolution view of the nucleotide pocket with K+ and Mg2+ in place. X-ray diffraction, 2 Å.
- 4PKOGroEL-GroES2 footballShows that both rings can carry GroES at the same time. X-ray diffraction, 3.84 Å.
- 2CGTGroEL with phage co-chaperonin gp31A natural cage-size variant: gp31 builds a larger chamber than GroES. Electron microscopy, 8.2 Å.
- 1G31Phage T4 gp31 heptamerThe lid part on its own, for comparing GroES and gp31 geometry. X-ray diffraction, 2.3 Å.
- 4PJ1Human mitochondrial HSP60-HSP10 footballThe human group I chaperonin, for a species comparison with GroEL. X-ray diffraction, 3.15 Å.
- 1A6DArchaeal thermosome, group II chaperoninA group II chaperonin that closes with its own apical lid and needs no GroES. X-ray diffraction, 2.6 Å.
References
- 1Braig et al., Nature 1994
- 2Xu et al., Nature 1997
- 3Rye et al., Nature 1997
- 4Rye et al., Cell 1999
- 5Burston et al., Journal of Molecular Biology 1995
- 6Todd et al., Science 1994
- 7Weissman et al., Cell 1995
- 8Weissman et al., Cell 1996
- 9Clare et al., Cell 2012
- 10Clare et al., Journal of Molecular Biology 2006
- 11Tang et al., Cell 2006
- 12Sakikawa et al., Journal of Biological Chemistry 1999
- 13Kerner et al., Cell 2005
- 14Hunt et al., Cell 1997
- 15Ditzel et al., Cell 1998
- 16Nisemblat et al., PNAS 2015
- 17Yang et al., PNAS 2013
- 18Wang et al., Cell 2002
- 19Hayer-Hartl et al., Trends in Biochemical Sciences 2016
- 20Horwich et al., Quarterly Reviews of Biophysics 2009
- 21Bartolucci et al., Journal of Molecular Biology 2005
- 22King et al., Nature 2014
- 23Bale et al., Science 2016
- 24Hsia et al., Nature 2016